PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6451_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 469aa    MW: 51980 Da    PI: 7.8948
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6451_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06145165526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     C +++  G C +Gd CkF H+
  Neem_6451_f_2 145 VCEHWMS-GNCVRGDECKFLHS 165
                    699***9.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0073257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.4273258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.89E-7140165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479140167IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5141166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5145165IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4145165IPR000571Zinc finger, CCCH-type
SuperFamilySSF509782.93E-41157460IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.106.3E-45171461IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003209.4E-6171210IPR001680WD40 repeat
PfamPF004005.5E-5175210IPR001680WD40 repeat
PROSITE profilePS5008213.148178219IPR001680WD40 repeat
PROSITE profilePS5029418.8178381IPR017986WD40-repeat-containing domain
PRINTSPR003201.7E-7197211IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780197211IPR019775WD40 repeat, conserved site
SMARTSM0032012250287IPR001680WD40 repeat
SMARTSM003204.2E-6295332IPR001680WD40 repeat
PfamPF004001.1E-4301332IPR001680WD40 repeat
PROSITE profilePS5008213.75302341IPR001680WD40 repeat
PRINTSPR003201.7E-7319333IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780319333IPR019775WD40 repeat, conserved site
SMARTSM003200.024335372IPR001680WD40 repeat
PRINTSPR003201.7E-7359373IPR020472G-protein beta WD-40 repeat
SMARTSM00320180378419IPR001680WD40 repeat
SMARTSM003207.3422459IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDVKASRRFT NKRERSFFNS LGQLEGGGGS WPTKKVICFY HLEGRCNRNP CRFLHVESPA  60
PHVNRKIAKQ IPEDVPKKSY SYNRPKKSYS YNRPKNIWVS SGSEDRNQDL IKRNRNYTAP  120
KKLASSTGND ESGNTTITQK TTKNVCEHWM SGNCVRGDEC KFLHSWYRGD GFSMLAKLDG  180
HKKAVCGIAL PLGSEKLYSG SRDGTVRLWD CYTGQCASVI NLGAEVGSLI CEGPWVFAGM  240
PNFVKAWNIE SSAEHSLNGP VGQVYSMVVG NEMLFAGAQD GDILAWKGNP GAKDPFQLAA  300
FLRAHTHAVT CLAVGASKLY SGSMDNTIRV WDLDTLELVM TLDDHTDAPM SLLCWDQYLL  360
SCSLDQTIKV WVATEAGNLE VAYTHNEDHG LLALCGMNDA EGKPVLICSC NDNSVRLYEL  420
PSFIERGRIF SKREVRALQI GPDGLFFTGD GTGMLSVWKL SPKPSEEMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B3e-14197422172391F-box/WD repeat protein 7
2ovq_B3e-14197422172391F-box/WD repeat protein 7
2ovr_B3e-14197422172391F-box/WD repeat protein 7
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421276.10.0hypothetical protein CICLE_v10004933mg
SwissprotQ9FNZ11e-163C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLV4SC270.0V4SC27_9R
STRINGVIT_10s0071g00490.t011e-173(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-167C3H family protein